3
votes
Accepted
Coexpression network analysis
igraph is a serious general network theory framework for any given data science application. It permits full directionality and describes vertices (nodes), edges (...
M__♦
- 12.8k
1
vote
Accepted
Are there any databases for gene co-expression or expression pattern clustering?
How about:
http://www.informatics.jax.org/expression.shtml
http://www.emouseatlas.org/emage/home.php
Other potential databases of interest:
https://biokeanos.com/search?q=co-expression+%2Bmouse
- 261
1
vote
Which module to select for Pathway analysis based on Module trait correlation and pvalue?
If you can run pathway analysis programmatically on all modules, yes, do it on all modules. Otherwise, select the modules with strongest associations with each subtype, both positive and negative. I ...
- 1,066
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