3 votes

Drawing 2 heatmaps with the same gene order

Please read through the ComplexHeatmap manual, especially the section on row and column orders: https://jokergoo.github.io/ComplexHeatmap-reference/book/a-single-heatmap.html#get-orders-and-...
Ram RS's user avatar
  • 2,298
2 votes
Accepted

How to visualise the proportion of clonal genes to sub clonal genes

I've used some dummy data for simplicity. It's fairly easy to do this with ggplot, but you have to format your matrix-like data for ggplot input. eg : ...
RoB's user avatar
  • 146
1 vote

"Error in col2rgb(colors, alpha = TRUE) : invalid RGB specification" when running HeatmapAnnotation() (from ComplexHeatmap)

Looking at the documentation, it seems that HeatmapAnnotation expects a vector, whereas you are giving it a list. It is not clear on what acceptable color types are....
Maximilian Press's user avatar
1 vote
Accepted

Constructing Two Triangle Heatmaps in One Square

This solution doesn't reproduce the plot, but it would do if the numerical ranges between the triangles do not overlap. ...
M__'s user avatar
  • 12.3k
1 vote
Accepted

Is there a way to customize what observations are plotted in ComplexHeatmap?

What is fed into ComplexHeatmap is what it outputs! So if one of your genes has a Missense_Mutation as well as a ...
haci's user avatar
  • 4,092

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