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Obtaining all protein sequences with a particular domain architecture from Pfam

An alternative way is using the Hmmer website, and do a hmmsearch with the Pfam accession, forex. (PF02910). Navigate to the domain tab and find the domain architecture that you are interested in and ...
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2 votes
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Obtaining all protein sequences with a particular domain architecture from Pfam

I believe you can do this using SQL files of the database. First you need to get the integer accession of this architecture. architecture table has the following ...
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2 votes

Obtaining all protein sequences with a particular domain architecture from Pfam

That does not appear to be possible using PFAM. I would suggest trying a different database. I managed to perform the same query using SMART (http://smart.embl-heidelberg.de/), via entering "Pfam:...
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1 vote

Can anyone point me towards a HiC Dataset with domains of high confidence?

I guess your best chance is one of the in-situ HiC papers from the Lieberman-Aiden lab. There are not too many HiC datasets with 10kb-or-better resolution out there for human. I would check this one: ...
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