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2 votes

Error with eggNOG-mapper jobs

I'd like to answer my own question as I have found the solution for this and thought it might help anyone else trying to use eggNOG-mapper. The prerequisite for uploading the input file with the ...
K_081's user avatar
  • 149
2 votes
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Error with eggNOG-mapper jobs

There is a known bug between eggNOG-mapper2 and eggNOG6. This is described here: https://github.com/eggnogdb/eggnog-mapper/issues/428 In your case, I'm not sure on what strategy you are deploying ...
M__'s user avatar
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1 vote
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Calculating Fisher's exact test for COG categories

What I would personally do is run a Χ2 ...
M__'s user avatar
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1 vote
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Fisher's exact test for COG categories in pan, core genome analysis

Sorry I've got my head around your question. For Fisher's Exact you need 2 "independent" observations and for SciPy its a 2x2 table. So in your case ... Genome Species A Species B Pan 6.07 ...
M__'s user avatar
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1 vote
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eggNOG: DNA-DNA or protein-protein orthologue identification?

I can answer this now. I've been 'under the hood' of eggNOG and its using "hmm" (hidden Markov model) very likely, almost certain, the Eddie (sp?) group's ...
M__'s user avatar
  • 12.6k

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