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3 votes

seqret error when trying to transform GFF3 and FASTA files into EMBL format

I'm one of the EMBLmyGFF3 developers. If the compressed annotation is 396MB as mentioned by @terdon it is not a small annotation... In the worse case we have tested we never waited more than few ...
juke34's user avatar
  • 311
3 votes
Accepted

Using python to call Emboss wordcount

You have to use command line options, not interactive prompts, like so: ...
Timur Shtatland's user avatar
2 votes

How can I run the fdnadist command from the EMBOSS package?

I found fdnadist in embassy-phylip package https://anaconda.org/bioconda/embassy-phylip
437364's user avatar
  • 21
2 votes
Accepted

How can I run the fdnadist command from the EMBOSS package?

To find emboss packages type wossname, then hit enter twice. You will see all the programs. There is one called ...
user3479780's user avatar
2 votes
Accepted

seqret error when trying to transform GFF3 and FASTA files into EMBL format

That error is telling you that the script you were running was killed by signal 9, also known as SIGKILL, while executing the ...
terdon's user avatar
  • 10.2k
1 vote

seqret: Warning: bad /protein_id value

You're supplying a GTF feature file, but telling it that the features are in GFF3 format. I think you need -fformat gff2. See https://www.ebi.ac.uk/Tools/sfc/...
heathobrien's user avatar
  • 1,816

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