5
votes
Accepted
Using SED command in Nextflow script
Inside your script's command string, assembly_id is actually a java.lang.String so trying to manipulate it with a Bash operation (i.e. using ...
- 3,024
4
votes
Nextflow with Minimap2 not working
Command error:
.command.sh: line 2: ./minimap2: No such file or directory
Work dir:
/Users/rimo/Desktop/AWS/minimap2/work/ae/47e3c0708f33b1949315fc83066b95
...
- 3,024
3
votes
Accepted
KeyError '/n' in Bio SeqUtils Package ProtParam Script
When the user is pushing enter on their keyboard, it is likely inserting a newline character (\n) at the end of the user input <...
- 191
2
votes
Accepted
Nextflow Pipeline: Unexpected Input "{"
Nextflow does not have an env process directive. If stringtie is not already in your $PATH, ...
- 3,024
2
votes
ValueError: count not convert string to float
Ah! I finally got it to work! I used your command but I had to change it up a little bit to work with my data. The final command I used is this:
...
- 844
1
vote
Accepted
ValueError: count not convert string to float
The following would be useful,
print (heterozygosity_df.columns)
This looks like static typing issue within pandas. What I suspect is ...
M__♦
- 11.3k
1
vote
Pairwise alignment using CIGAR String
Following the basic rules and preferring the AAG contiguous
we can write:
01234
AAGCT (ref)
AAAAGGC (query)
So the ...
- 111
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