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-2 votes

How to analyze GC content of fasta file?

Try this small package/library: https://github.com/willros/GuCi/ It produces a plot of the gc content of the whole genome. It works on small genomes, like bacteria. Hope you like!
William Rosenbaum's user avatar
1 vote

How can I filter variants in a VCF file based on size?

Vcftools allows you to filter to include or not include a list of sites. https://vcftools.github.io/man_latest.html#SITE%20FILTERING%20OPTIONS If you can first grab the locations of indels of this ...
Sarah's user avatar
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