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4 votes
Accepted

Availability of information on genes in Gnomad VCF data

This question has gone through some iterations and commentary, so I've decided to just answer it, though it's more of a "homework" question. What you need to do is to look at the VCF file, ...
Maximilian Press's user avatar
3 votes
Accepted

Variant allele frequency versus population frequency

gnomAD provides a global Allele Frequency as well as AF values for most subsets. gnomAD does not provide individual genotypes (as far as I know), so calculating custom AF for non-precomputed subsets ...
Ram RS's user avatar
  • 2,310
1 vote

Allele frequency gnomad data

I don't do eukaryotes, well humans anyway, but in population genetics an allele frequency of zero simply means it is present in no individuals against the reference allele. It doesn't mean the allele ...
M__'s user avatar
  • 12.3k

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