2
votes
Accepted
Fitting branch models with godon
Branch-models are currently not implemented in godon. In the PAML manual Ziheng Yang writes:
This model is very parameter-rich and its use is discouraged.
This was one of the reasons I did not ...
- 2,695
1
vote
panic: division of zero by zero or infinity by infinity error when running GODON positive selection analysis
Ah wait you mentioned a branch sites test, right that makes sense. You've got two or more identical sequences in the analysis. Ensure there are no identical sequences in your alignments and ... PRESTO!...
- 7,284
1
vote
Accepted
What are the p01sum and p0prop parameters in godon?
Disclaimer: I'm the author of godon. The question above comes from the real communication with a software user.
In the godon implementation of the branch-site model I performed the following ...
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