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3 votes

Available phenotype data from GTEx

If helpful for anyone else, I found that all and much more are available. See below 2 links.
Sylvia Rodriguez's user avatar
2 votes

Is there a single cell RNAseq equivalent of GTEx or TCGA?

I think the most well-known scRNA dataset that is similar to GTEx in the Human Cell Atlas ( It is pretty much still ongoing but there are some preliminary data.
Phoenix Mu's user avatar
1 vote

How to extract column from a matrix matching the another file (sample file)

Assuming your "master" files looks like this: ...
dc37's user avatar
  • 1,041
1 vote

How to remove batch effect from TCGA and GTEx data

There is a paper that did what you are asking: Unifying cancer and normal RNA sequencing data from different sources.
burger's user avatar
  • 2,199

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