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3 votes
Accepted

Available phenotype data from GTEx

If helpful for anyone else, I found that all and much more are available. See below 2 links. https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/dataset.cgi?study_id=phs000424.v8.p2&phv=169091&...
Sylvia Rodriguez's user avatar
2 votes

Is there a single cell RNAseq equivalent of GTEx or TCGA?

I think the most well-known scRNA dataset that is similar to GTEx in the Human Cell Atlas (https://www.humancellatlas.org). It is pretty much still ongoing but there are some preliminary data.
Phoenix Mu's user avatar
1 vote
Accepted

How to extract column from a matrix matching the another file (sample file)

Assuming your "master" files looks like this: ...
dc37's user avatar
  • 1,041
1 vote

How to remove batch effect from TCGA and GTEx data

There is a paper that did what you are asking: Unifying cancer and normal RNA sequencing data from different sources.
burger's user avatar
  • 2,199

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