3
votes
Accepted
Available phenotype data from GTEx
If helpful for anyone else, I found that all and much more are available. See below 2 links.
https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/dataset.cgi?study_id=phs000424.v8.p2&phv=169091&...
- 257
2
votes
Is there a single cell RNAseq equivalent of GTEx or TCGA?
I think the most well-known scRNA dataset that is similar to GTEx in the Human Cell Atlas (https://www.humancellatlas.org). It is pretty much still ongoing but there are some preliminary data.
- 857
1
vote
Accepted
How to extract column from a matrix matching the another file (sample file)
Assuming your "master" files looks like this:
...
- 1,021
1
vote
How to remove batch effect from TCGA and GTEx data
There is a paper that did what you are asking: Unifying cancer and normal RNA sequencing data from different sources.
- 2,169
Only top scored, non community-wiki answers of a minimum length are eligible