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3 votes
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Help Understanding the Greedy Motif Search Algorithm from Textbook

I figured this out after rereading the chapter a few times. I am going to try my best to describe the solution here for anyone else who runs into this issue, since I don't think this was meant to be ...
David Rouleau's user avatar
3 votes

Help Understanding the Greedy Motif Search Algorithm from Textbook

I have been similarly stuck on the Bioinformatics textbook motif problems in Rosalind, mostly because the documentation included with the problems is sparse, useless, or nonexistent. The mouseover for ...
gringer's user avatar
  • 14.3k
1 vote

Multi-pattern search in aligned sequences

Maybe a job for seqkit locate. Here -m 0means no mismatches allowed. I do not understand really your output format, so maybe ...
ATpoint's user avatar
  • 1,420
1 vote

Multi-pattern search in aligned sequences

I wonder if FIMO might be something that you could use. The online version doesn't have the capacity 70 deal with 700GB of data, but you could try it out with a subsample to see if the output is ...
Laura's user avatar
  • 937

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