6
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How to get strain names/ids contained in a multi FASTA file using seqkit?
The nice thing about seqkit is that the answer is really simple and memorable:
seqkit seq -n sequences.fasta
This will output a ...
- 377
5
votes
How to get strain names/ids contained in a multi FASTA file using seqkit?
You can trivially do this with standard *nix tools. Here are a few options:
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1
vote
Lifting snp rsid build 37 to 38
There are multiple tools to use for this. Might I suggest the following reads: Introduction to liftover tools, where they also refer to this usefull post BioStars post. Maybe also consider reading ...
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1
vote
How to get strain names/ids contained in a multi FASTA file using seqkit?
Or a bit more verbose ...
perl -nle 'push @res, $_ while s/^>//; END {print join "\n",@res}' myfile.fa
M__♦
- 10.2k
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