6 votes

How to get strain names/ids contained in a multi FASTA file using seqkit?

The nice thing about seqkit is that the answer is really simple and memorable: seqkit seq -n sequences.fasta This will output a ...
Cornelius Roemer's user avatar
5 votes

How to get strain names/ids contained in a multi FASTA file using seqkit?

You can trivially do this with standard *nix tools. Here are a few options: ...
terdon's user avatar
  • 9,352
1 vote

Lifting snp rsid build 37 to 38

There are multiple tools to use for this. Might I suggest the following reads: Introduction to liftover tools, where they also refer to this usefull post BioStars post. Maybe also consider reading ...
Dandelion's user avatar
  • 129
1 vote

How to get strain names/ids contained in a multi FASTA file using seqkit?

Or a bit more verbose ... perl -nle 'push @res, $_ while s/^>//; END {print join "\n",@res}' myfile.fa
M__'s user avatar
  • 10.2k

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