4
votes
Matches, mismatches and indels
Try one of these:
GATK:
https://gatk.broadinstitute.org/hc/en-us/articles/360036194592-Getting-started-with-GATK4
freebayes:
https://bioinformaticsworkbook.org/dataAnalysis/VariantCalling/freebayes-...
- 1,563
2
votes
Accepted
VCF: false insertions?
Microsatellites, minisatellites and other type of repetitive variation are a known feature of genomes.
I agree with previous comments in the sense that what you are observing here might as well be ...
- 750
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