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6 votes
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How I loop over this code

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story's user avatar
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5 votes
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How can I run a command for multiple files?

Assuming all your vcfs are in the same folder: ...
h3ab74's user avatar
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2 votes

Appending some columns from one tabular file to another

As you are seeing, most of the name of txt files are matched Our eyes and brains are smarter than computers. We can see patterns that can be difficult to describe. For a computer to be useful in this ...
Ram RS's user avatar
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2 votes

How can I run a command for multiple files?

If additional CPUs are available: ...
Stuber's user avatar
  • 221
2 votes
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Remote blastn - what is breaking my (bash) loop?

I gave it a whirl using a random bit of SARS-CoV-2 ...
M__'s user avatar
  • 12.1k
2 votes

Remote blastn - what is breaking my (bash) loop?

This is likely a throttling issue - see here for some details, specifically the one about contacting the NCBI server more than once every 10 seconds. You may be able to submit a multiFASTA of all your ...
Scot's user avatar
  • 782
2 votes

Mapping to assemblies in subdirectories

The most likely issue is that the assembly.fasta file is not found in the current directory. Taking @m's comments into consideration, a minimal rewriting of your ...
gringer's user avatar
  • 13.9k
2 votes

STAR aligner multiple fastq files

It seems the sequencing is single-end, and there is only one fastq per sample. If so: ...
h.mon's user avatar
  • 323
1 vote
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Error after trimming illumina adapters

First of all, you aren't actually setting the $outfile variable. Your loop has this basic format: ...
terdon's user avatar
  • 9,846
1 vote

How do I set a neural network to loop multiple times and average the resulting values?

The concern with your approach is called 'leakage' because you are parameterising the same data set that you are training. This can easily lead to overtraining is in ANN (artificial neural networks) ...
M__'s user avatar
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