2
votes
Accepted
Can bwameth accept unaligned Bam?
No, it's a bwa mem wrapper for bisulfite data essentially and bwa mem accepts fastq only.
- 1,128
1
vote
Read methylation data from tar files on GEO (GSE73303)
As I've already told you here GEO Methylation dataset "GSE73303" shows 0 features GEO/GEOquery does not provide ready-to-use processed NGS data. It can be that the authors provide processed ...
- 1,128
1
vote
dog coordinates (canFam3) to human coordinates (hg19)
Based on this old answer, this is not recommended for liftOver. For between-species liftovers, it is claimed that you are likely to want a different tool such as pslMap. For a lot of rather detailed ...
- 3,814
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