2 votes
Accepted

Can bwameth accept unaligned Bam?

No, it's a bwa mem wrapper for bisulfite data essentially and bwa mem accepts fastq only.
ATpoint's user avatar
  • 1,128
1 vote

Read methylation data from tar files on GEO (GSE73303)

As I've already told you here GEO Methylation dataset "GSE73303" shows 0 features GEO/GEOquery does not provide ready-to-use processed NGS data. It can be that the authors provide processed ...
ATpoint's user avatar
  • 1,128
1 vote

dog coordinates (canFam3) to human coordinates (hg19)

Based on this old answer, this is not recommended for liftOver. For between-species liftovers, it is claimed that you are likely to want a different tool such as pslMap. For a lot of rather detailed ...
Maximilian Press's user avatar

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