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1 vote
Accepted

Pseudotime analysis on multiple samples

I would try it both ways (i.e. run pseudotime analysis on individual and combined samples). If you have the same transcriptional trajectories in multiple samples then you might be able to capture this ...
Chris_Rands's user avatar
  • 3,948
1 vote

how to export the monocle data into Seurat

There's no default for the export_to option, so you just need to specify export_to="Seurat". Note that monocle2 doesn't seem to ...
Devon Ryan's user avatar
  • 19.6k

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