2
votes
Accepted
calculating mutation frequencies for every gene
The code is fine. The only issue is you'd put \s characters in-between the column header names. I've place an additional "mutation_frequency" column because thats how I'd do it.
...

M__♦
- 11.9k
1
vote
To find amino acid substitution from fasta alignment
User-friendly alternative:
Get the alignment into Jalview, set a colour scheme you like, and inspect alignment visually. You can move sequences up and down in the alignment with keyboard arrows, so ...
1
vote
Sanger sequencing annotation error
Just to give my thoughts:
The missing information is the actual sequence
Is this a conflict in the change in position of the insert?
Could it simply be a consequence of down stream numbering, either ...

M__♦
- 11.9k
Only top scored, non community-wiki answers of a minimum length are eligible
Related Tags
mutations × 44r × 7
python × 6
sequence-alignment × 4
proteins × 4
genomics × 4
wgs × 4
somatic × 4
vcf × 3
snp × 3
database × 3
covid-19 × 3
bioconductor × 2
gene × 2
phylogenetics × 2
genome × 2
phylogeny × 2
sequence-analysis × 2
ngs × 2
variant-calling × 2
sars-cov-2 × 2
reference-genome × 2
cancer × 2
sam × 2
gatk × 2