New answers tagged

2 votes

How important are the homozygous variants that get unnecessarily deleted using liftover?

All this is saying is that the tool doesn't lift over variants which aren't present in the vcf. I can't imagine this being a big deal in any analysis I've done and it's exactly what I'd expect the ...
user438383's user avatar
  • 1,482
1 vote
Accepted

How to get the nucleotide sequence for protein NCBI accession code, programatically?

Yes its easy using Biopython. What I'm requesting is the sequence must be >9500 otherwise it's discarded. In your case this value will be MUCH bigger, because these are bacterial genomes. ...
M__'s user avatar
  • 10.3k
0 votes

How to get the nucleotide sequence for protein NCBI accession code, programatically?

You can use R Rentrez, in the link you can find a tutorial for the package usage.
flavinsky's user avatar
  • 214

Top 50 recent answers are included