New answers tagged ncbi
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Elegant Way to Extract Gene Symbols from FASTA Headers
We can't be sure without seeing your file, but if what you really want is the text between the last parentheses on lines that start with >, then you can do this ...
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How can extract the list of genes name from the raw data in GEO?
Answer from @benn, converted from comments:
You can find a step by step description in the limma user's guide. Just download the CEL files, and follow the user guide.
[please edit to improve this ...
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Elegant Way to Extract Gene Symbols from FASTA Headers
There are probably better ways of doing this with Python or another tool, but here's a quick method that works in bash (tested on Linux) assuming that the Gene Symbols are contained in parentheses, i....
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How can I download from NCBI all the ITS genes and the related taxonomy?
For batch operations, it would be better to acquire a NCBI API key and combine GNU parallel and Entrez Direct .
If you already have the accession numbers of ITS1 and ITS2 genes, put the accession ...
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How can I download from NCBI all the ITS genes and the related taxonomy?
I recommend to use Biopython:
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How can I get data of single cell RNA sequence with raw count?
If the authors did not provide the raw counts, and I don't think it is compulsory, unfortunately you will need to download the raw data, align and count.
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