The latest version solves the issue. Source : https://github.com/davidemms/OrthoFinder/issues/403 Latest Version: https://github.com/davidemms/OrthoFinder/releases/tag/2.4.0


It's hard to say for sure without seeing the exact commands you used. However, Orthofinder identifies/defines single-copy orthologues as those genes present in a single copy in all species being compared in the analysis. If a BUSCO orthologue is present in more than one copy in one of the species being compared (could be multi-copy, could be fragmented etc.),...

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