5
votes
Accepted
Construct phylogeny from a Fasta file
You will first need to align your sequences, and then feed the alignment to a program that can generate trees. I am very much out of date in this field and I haven't done anything like that in at ...
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1
vote
Construct phylogeny from a Fasta file
Here's the result from FigTree. I thought there was a bug in the newick file, but it was fine.
I strongly recommend the answer by @terdon because there are other issues here, for example ...
- 7,339
1
vote
Accepted
Should I expect / use a prokaryote-specific substitution model when building a phylogenetic tree?
IQTree is a fashionable method for speeding up bootstrapping and used on ultra large datasets. What IQTree might be doing is rigidly fixing a model and parameterisation is not estimate via the ML. ...
- 7,339
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