# Tag Info

1 vote

In the efetch.fcgi URL, you can set rettype=fasta to download the nucleotide sequence or ...
• 111
1 vote
Accepted

### Using R ggtree, attach extra data next to the nodes on an illustrated tree/newick file

I ended up using the following code to solve this issue: Change the tsv file and the tree file name accordingly. Be mindful of ...
• 107
Accepted

### Plot phylogenetic tree from list of edges

The following example uses python to generate the newick string. You can than import that in R for further analysis. Please keep in mind that you can not use self reference for node4 (9,9,9), so I ...
• 148
1 vote
Accepted

### Is there a graphical/interactive 16S rRNA clustering method?

My recommendation is MegaX. It's the closest thing in phylogenetics to an all encompassing GUI. This has a nice visual alignment editor which highlights conserved, variable and parsimonious sites. It ...
• 9,665