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2 votes
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how to add a custom elements into PyMOL visualization?

my attempt : ...
pippo1980's user avatar
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1 vote

Align two different structures with respect to their active sites or heme cofactor

OK, trying to answer question 2, think I need to be sure that both enzymes have same identical heme cofactor and then find a rotation/translation matrix that applied to heme of protein A moved exactly ...
pippo1980's user avatar
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1 vote

How can I measure the distance between each pair of carbon alphas in overlayed protein structures?

Ok, quite late.... my code stolen from https://pymolwiki.org/index.php/Spectrum as per in my comment: Not an expert here, but you could try to create a pdb with only c-alpha where B factor column has ...
pippo1980's user avatar
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1 vote

Loop Pymol command get_area

Ok went back to this question having pymol within a hand's reach this time. Question is not really clear to me so I am posting a reasonable (to me) version of the ...
pippo1980's user avatar
  • 1,088

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