New answers tagged python
2
votes
Assign score to PyRanges from another PyRanges object
I have some inspiration below. It computes a weighted score based on overlap.
I need to know what exactly you want the overlap BX and BY to be. Could you post some example data and expected output?
<...
- 451
0
votes
Refactoring pandas using an iterator via chunksize
The solution posted by @el_oso and @Corralien here was as follows:
if you're already having memory issues reading the file, the below will actually read and write to the new file in chunks.
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M__♦
- 10.2k
2
votes
Error while running computeMatrix command in Deeptools
It worked, I installed a the newer version of deeptools, from GitHub:
https://github.com/deeptools/deepTools
0
votes
Generating 3D cartesian coordinates of a peptide and computing van der Waal interactions (1-4 atoms) for a given set of dihedral angles?
The PDB module in Biopython is worth checking out for obtaining angles, distances, torsion angles. It is described from p208 at http://biopython.org/DIST/docs/tutorial/Tutorial.pdf. It doesn't do van ...
M__♦
- 10.2k
3
votes
Accepted
Tidying MEGAN Taxonomy for Python/R Analysis
Save the following as a python script (e.g., named splitty.py). Make the script executable by doing chmod +x splitty.py. Then, ...
- 487
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