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2 votes

How to visualize unique and overlapping genes in upSet R plot

No idea how your code looks like before pasting into the web form, but in general it is not a great idea pasting +260 rows/lines of data in your script. From what I can see in the form you have ...
darked89's user avatar
  • 283
2 votes
Accepted

Extracting P-Values for Co-Expressed Genes Within WGCNA Modules

The simplest way is to calculate the correlation matrix of genes in the module you want and use that as input to exportNetworkToCytoscape. Something like this: <...
Peter Langfelder's user avatar
2 votes

Bar Graph of Expression Data from Seurat Object

Regarding the other answer with the below code: ...
Ruggero Belluomo's user avatar
1 vote

How to calculate distance between two regions from bed like dataframe in R?

There are two functions in the tidyverse suite (specifically dplyr) called lead and lag that ...
gringer's user avatar
  • 13.9k
1 vote
Accepted

WGCNA: Extract genes within the different modules to create a dataframe with two columns

You can get this information, more or less, using the functions exportNetworkToVisANT and exportNetworkToCytoscape. You will find some extra columns that you can ignore or delete from the resulting ...
Peter Langfelder's user avatar
0 votes

Subsetting a Seurat object based on colnames

If you want the column names to be preserved, you can subset the column names as a vector: ...
gringer's user avatar
  • 13.9k

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