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You may be interested in a Python library I developed called PyReference # Install python3 -m pip install pyreference # Process GTF into a JSON file pyreference_gff_to_json.py --gtf gencode.hg38.gtf # Create a setup file (see website for details) # Run against your BAM file pyreference_biotype.py ${BAM_FILE} This generates a graph: As well as a CSV of read ...


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