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2 votes

Are there efficient tools for PANGENOMES visualization (size >1Gbp)?

One additional option that I'll mention is anvi'o (scroll down to the figures to see if it's something you might be interested in https://merenlab.org/2016/11/08/pangenomics-v2/ ).
Laura's user avatar
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2 votes

Are there efficient tools for PANGENOMES visualization (size >1Gbp)?

the cactus docs talk about visualization here https://github.com/ComparativeGenomicsToolkit/cactus/blob/master/doc/pangenome.md#visualization I also collect visualization tools and these are the ones ...
Colin D's user avatar
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1 vote

Constructing a pangenome graph using multiple samples

To construct a pangenome that can be used as reference for the assembly of organisms of the same specie I used the Minigraph-Cactus pipeline which also has a very clear tutorial using Yeast genomic ...
AIsaac's user avatar
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