3
votes
Kallisto RNA-seq errors because of incompatible indices when running <kallisto quant> using downloaded mouse index
It means that the version of the tool used for indexing and your current version are different and not compatible. Either downgrade your version to the version used for indexing, or build a new index ...
- 1,108
3
votes
issue with rna seq analysis
Several issues:
There is no non-coding RNA genome. There are non-coding genes but the genome fasta files from Ensembl are always the entire genome and this is what you should align against. Probably ...
- 1,108
1
vote
Mitochondrial genes - TPM calculation bulk RNA-Seq
Yes, this is a common situation. Not just for mitochondrial genes, but for any gene that may be an outlier (e.g. the B-cell receptor gene in a contaminant/unexpected B-cell population). The way to get ...
- 13.8k
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