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How to calculate logCPM across all samples?

This post on the Bioconductor mailing list explains the difference: https://support.bioconductor.org/p/100463/
jul635's user avatar
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Question about umap using different numbers of pca components as initialization

It is a bit odd that different numbers of principal components are giving identical results, especially given that even the same initialisation settings with different UMAP epoch numbers will give ...
gringer's user avatar
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Question about umap using different numbers of pca components as initialization

It seems you are performing PCA -> UMAP. The results you are reporting actually look cool. It's a good answer and there's nothing to worry about. It also shows good analytics, 'cause you're ...
M__'s user avatar
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