6
votes
Accepted
Error in as.vector(x) : no method for coercing this S4 class to a vector
You can't cbind a bunch of obscure object types.
If you want merged count tables you should do this:
mdat <- do.call(cbind,lapply(dat,assay))
Where row.names ...
- 1,573
2
votes
R studio failed to install the latest development version of hdf5r from Github (win10)
Try running this:
source("https://bioconductor.org/biocLite.R")
biocLite("hdf5r")
Just a different method of installing packages besides github. It is more ...
- 836
2
votes
Accepted
ScaleData() from Seurat causes crash on RStudio Cloud
It seems RStudio server doesn't know it's limitations. Currently, Projects are limited to 1GB of RAM. Using the R package ulimit which mirrors the function of ...
- 1,149
2
votes
fastqCleaner failing to launch in RStudio
The issue is with the navbar page, downgrading shiny to 1.6 or in my case 1.4 fixed it for me, the detailed link to find to the solution is here: https://github.com/rstudio/shiny/issues/3556
Cheers.
- 21
1
vote
Accepted
Get Dockerfile of a bioconda package
The Dockerfile is generated by galaxy-utils, so I'm not entirely sure what it looks like. However you should be able to generate such a "mulled" container as documented here. In short, ...
- 19.6k
1
vote
Why is library(Seurat) causing my R session to have a fatal error?
If you haven't already done so I would make a complete installation of Anaconda, particularly good with bash. The I would either install using Anaconda Navigator, or ...
...
M__♦
- 11.9k
1
vote
Uploading files from local computer or web in rstudio cloud
Velocyto.R
I'm not sure that your issues is from RStudio cloud but more about how you are trying to open the file. The file that you are trying to import is not a ...
- 1,021
1
vote
Uploading files from local computer or web in rstudio cloud
This seems to be an encoding problem (certain characters not being recognized), see this, this and also this. Probably the file "/cloud/project/SCG71.loom" is ...
- 3,947
1
vote
Accepted
How can I find all the columns available in UniProt.ws package for R?
From the UniProt.ws manual:
columns shows which kinds of data can be returned for the
...
- 3,947
1
vote
How can I find all the columns available in UniProt.ws package for R?
Do you have a small sample of the proteins you are looking for and what you have tried so far in R using Uniprot.ws ? (including output of it), it could be helpful to identify your problem and how to ...
- 1,021
1
vote
Creating a computational table to show the number of available genes between all possible pairs of combinations in eight gene lists
To make a confusion matrix of 4 lists against 4 other lists, you need to get the length of all intersecting genes for each pair. Here an example with letters instead of gene names.
...
- 3,571
Only top scored, non community-wiki answers of a minimum length are eligible