New answers tagged sars-cov-2
0
votes
How can I limit blast results to exclude a specific taxonomic ID?
I would personally look at is the version number of the blast you are using.
Bugs around blast+ versions >= 2.9.0 (April 2019) for -taxids and I would assume <...

M__♦
- 11.9k
1
vote
How can I limit blast results to exclude a specific taxonomic ID?
This isn't particularly elegant, but it should work. First, extract the accessions into a file. Next, get the taxid for each of the accessions. Once you have that, you can identify the accessions that ...
Top 50 recent answers are included
Related Tags
sars-cov-2 × 67covid-19 × 64
phylogenetics × 16
phylogeny × 13
sequence-alignment × 10
python × 8
genome × 6
ngs × 6
coronavirus × 6
proteins × 4
assembly × 4
genomics × 4
virus × 4
r × 3
fasta × 3
statistics × 3
protein-structure × 3
sequence-analysis × 3
samtools × 3
public-databases × 3
variant-calling × 3
epidemiology × 3
rna-seq × 2
vcf × 2
database × 2