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1 vote

How to add bootstrap values to the phylogenetic tree generated by OrthoFinder?

Bootstrapping is easy just use iqtree iqtree -s file -m GTR+I+G -T 6 -B 1000 This will parallelise across 6 CPUs and results in 1000 bootstraps, whilst GTR is the ...
M__'s user avatar
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1 vote

Where to find asymmetric nucleotide substitution matrix with IUPAC encodings?

Additional answer on asymetric IUPAC score matrix. To get the scores with an asymentric score matrix. This is also implemented in the Bioconductor package MSA2dist (
kullrich's user avatar

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