New answers tagged snp
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SNP Signatures with Limited WGS Data:
Visualise your problem and solution.
6 SNPs is not a particularly large search space (64 possible combinations assuming a dominant or recessive model with dimorphisms, 729 if heterozygous variants are ...
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How should multi allelic sites be handled in calculation per site Fst?
Hmmmm .... I personally would not use a single VCF to calculate Fst in the way you are describing. It will also miss one of the nucleotides. I would aggregate across VCFs for a homologous position and ...
M__♦
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