3 votes
Accepted

Tabix queries spanning chromosomes

Looking at the htslib source code, it seems like the answer is no, a single region specifier cannot span multliple chromosomes. Seems like the closest you can get is to enumerate all the chromosomes ...
Jukka Matilainen's user avatar
2 votes

VCF-merge fails due to tabix not producing .tbi files

You should go with the CSI index as it seems like the BAI indexes cannot handle chromosomes longer than 2^29. Your problem is that you're trying to merge the index files using ...
Ram RS's user avatar
  • 2,312
2 votes

How to obtain file offsets corresponding to range query in block-gzipped file

So if the purpose of obtaining file offsets is to access subportions of remote files via protocols that samtools supports, as mentioned in this comment, then you can make your life easier and use ...
init_js's user avatar
  • 319

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