What are values of FILTER column of vcf files produced by Mutect2
You haven't told us what commands you ran, so I am assuming you first ran Mutect2 and then FilterMutectCalls. If so, the ...
Extracting a column from a vcf file
Either the zcat command or gunzip -c will decompress the file in a streaming fashion to the standard output without writing the ...
Error in running Mutect2
Your input file pon.vcf.gz should be a gzip file, but from your file command it looks like it is an HTML file instead. Perhaps ...
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