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mgalardini

Computational biologist with a taste for microbiology

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8 Read and write FASTA files with more information than id and sequence Sep 1 '17
8 Getting a “system is computationally singular” error in sleuth Jun 16 '17
7 Which measure should be used in a PCA or RNA-seq data? TPM or counts? Aug 18 '17
6 How can I use Nanopore reads to close gaps or resolve repeats in a short-read assembly? Jul 26 '17
5 How to represent a deletion at position 1 in a VCF file? Sep 6 '17
5 Is it possible to create a DESeqDataSet with a user-provided design matrix? Aug 24 '17
4 Is it wise to use RepeatMasker on prokaryotes? Aug 24 '17
4 How do I efficiently perform a metagenome screen of “all” species? Aug 3 '17
3 Transform traditional blast output to `--outfmt 6` Sep 7 '17
3 True bam file encoding and viewing as text Sep 4 '17
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