user avatar
user avatar
user avatar
user366312
  • Member for 11 months
  • Last seen this week
3 votes
2 answers
133 views

Why does it require 4 vectors to calculate a torsion angle?

3 votes
1 answer
25 views

Are the information stored in the PBD files in the protein data bank complete or incomplete?

3 votes
1 answer
25 views

What is DSSP algorithm for?

2 votes
0 answers
28 views

Secondary structure assignment tool

2 votes
2 answers
63 views

Can I traverse/enumerate PDB one at a time using a Python script without downloading all of them to my local disk?

2 votes
2 answers
160 views

What is the difference between Assignment and Prediction?

2 votes
1 answer
68 views

How are tertiary protein structures represented in computers?

2 votes
0 answers
23 views

What is coarse-grained modeling of proteins?

1 vote
1 answer
29 views

Can Bioinformatics be used in developing a marketable product? [closed]

1 vote
1 answer
35 views

What is the basic difference between a protein and a ligand?

1 vote
0 answers
18 views

How can I calculate the radius of a residue?

1 vote
1 answer
18 views

What do these characters mean in a PDB file?

1 vote
0 answers
9 views

How can I parse alternative atom information?

1 vote
1 answer
138 views

How can I calculate the distances between two specific residues of a protein from a PDB file?

1 vote
0 answers
15 views

Is "Assignment" a part of the "Prediction" process? [duplicate]

1 vote
2 answers
166 views

How can I programmatically add a Hydrogen 'Atom' to a 'Residue' object?

1 vote
1 answer
34 views

What is the cutoff distance in this algorithm?

1 vote
1 answer
47 views

How can I list all amino acids in a protein using PyMOL?

0 votes
1 answer
30 views

How to represent a summary of disagreement between two secondary structure predictors given predictions for many proteins?

0 votes
1 answer
25 views

How can I draw a diagram of hydrogen bonds only on the basis of C-alpha backbone?

0 votes
1 answer
47 views

What does it mean by "PC" in this article?

0 votes
2 answers
135 views

Unable to execute DSSP algorithm from BioPython

0 votes
1 answer
62 views

What does the following diagram represent?

0 votes
0 answers
17 views

Why does it require four vectors to calculate a torsion angle? [duplicate]

0 votes
1 answer
22 views

How can I calculate the distance w.r.t. a beta sheet?

0 votes
1 answer
67 views

How can I get a list of neighboring Hydrogen atoms of an alpha-carbon?

0 votes
1 answer
288 views

How can I programmatically add Hydrogen to a PDB structure using BioPython?

0 votes
1 answer
90 views

How can I identify acceptor and donor atoms using BioPython?

0 votes
0 answers
6 views

Interlink among different length scales of simulation and modelling techniques

0 votes
1 answer
28 views

What does it mean by "topology" in the case of secondary and tertiary structures of proteins?