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finswimmer
  • Member for 6 years, 6 months
  • Last seen more than a month ago
10 votes
Accepted

How to run same command on multiple files?

9 votes
Accepted

Snakemake: Cannot find first rule?

7 votes
Accepted

How can I ask snakemake to produce a dag where each node represents a rule?

6 votes

How to check if indels in VCF files are left or right aligned?

6 votes
Accepted

Fix dash/empty ALT alleles for deletions in VCF

6 votes
Accepted

SNP vs Point Mutation

5 votes
Accepted

Sort vcf by contig and position within contig

5 votes
Accepted

How do I re-name the headers of my Fasta file?

5 votes

Running Snakemake in one single conda env

5 votes

How to run same command on multiple files?

5 votes

Selecting 65000 SNPs where AF is close to 0.5 in all or most populations

4 votes

Purpose of ### (3 consecutive pound signs / hashtags / octothorps) in GFF3

4 votes

Identify non-coding regions from a genome annotation

3 votes

samtools mpileup skipping read

3 votes

Identifying Indels from Chromatograms

2 votes

Double-counting coverage of overlapped read pairs

2 votes
Accepted

Python string editing in Snakemake

2 votes

Remapping genomic coordinates to account for indels

2 votes

How to manipulate a reference FASTA or bam to include variants from a VCF?

2 votes

Calculate average parental genotype

2 votes
Accepted

Genotyping technologies do not maintain phase?

2 votes

Chunk alignment in a name sorted bam for parallel processing

2 votes
Accepted

How to install genometools with anaconda?

1 vote

Any fast options to query large VCF bed intervals?

1 vote

Filter reads belonging to unique sequences with threshold

1 vote

awk for motif splicing from an amino acid alignment

1 vote

Error in installing Vep

1 vote

How to paste RSIDs in CADD output

1 vote

how to filter a multi-VCF for sex-specific genotypes?

1 vote

How can I extract the longest N isoforms per gene from a fasta file?