User Emily_Ensembl

4 votes

Accepted

What does 'Human Alternative sequence Gene' mean in Ensembl?

answered Nov 24, 2021 at 9:19

2 votes

HG19 Position meaning

answered Nov 23, 2021 at 14:24

1 vote

Synteny test and tools to use for mammalian organisms?

answered Nov 17, 2021 at 9:52

4 votes

Variant vs Allele vs SNP

answered Sep 17, 2021 at 7:19

5 votes

Why the gene symbol aliases have significantly different sequences?

answered Jul 14, 2021 at 11:57

1 vote

Accepted

Getting all variants in a region from ensembl

answered Jul 9, 2021 at 7:19

3 votes

Converting gene symbols between species

answered Jun 17, 2021 at 7:45

5 votes

How to identify the DNA sequence of a gene in the complete genome sequence FASTA format file?

answered Jun 9, 2021 at 10:00

1 vote

What is the best way to programmatically convert Ensembl ids from one release to other? e.g. transcript ids from release 75 to 100

answered Mar 22, 2021 at 13:51

1 vote

Retrieving all genes for a gene ontology term

answered Feb 8, 2021 at 14:10

1 vote

How do I create a VCF file of all known pathogenic mutations in a gene of interest?

answered Jan 12, 2021 at 13:31

3 votes

Accepted

1000 genomes missing SNPs on chr X in GRCh38

answered Sep 18, 2019 at 13:10

4 votes

Ensembl protein identifiers from different assemblies

answered Feb 4, 2020 at 14:43

4 votes

Accepted

Is it possible to obtain RefSeq transcripts from Ensembl database for GRCh37 to match Ensembl Genes?

answered Jan 21, 2020 at 15:44

3 votes

Accepted

Where can I get ensembl Medaka genome for RNAseq

answered Nov 21, 2019 at 13:13

4 votes

Accepted

Getting species from ensembl sequence id

answered Sep 26, 2019 at 7:47

0 votes

How to efficiently get human gene names from NCBI based on a large list of SNPs

answered Sep 3, 2019 at 7:56

1 vote

Discordance of Gene Ontology data between Mouse Genome Informatics and Ensembl sources

answered Jun 14, 2019 at 12:16

3 votes

VEP output SIFT_score unclear

answered Apr 10, 2019 at 10:05

5 votes

Accepted

How can I identify a recessive and dominant gene?

answered Dec 12, 2018 at 11:45

3 votes

Accepted

Retrieve all genes for a specific gene ontology

answered Nov 8, 2018 at 9:27

4 votes

Accepted

different results coming from biomart online and biomaRt R library

answered Nov 9, 2018 at 9:18

2 votes

Accepted

How do population genetics people define a population?

answered Sep 27, 2018 at 8:31

3 votes

Accepted

Understanding SNP coding for association analysis

answered Sep 23, 2018 at 6:46

0 votes

Sampling haplotypes

answered Aug 13, 2018 at 7:29

4 votes

Accepted

Are gene names same across species?

answered Aug 8, 2018 at 8:03

4 votes

Accepted

Python API for working with ENSEMBL genomes

answered Aug 6, 2018 at 15:35

1 vote

Variants in Exome that affect miRNAs related to Schizophrenia

answered Jul 23, 2018 at 8:04

1 vote

Effect of mutation in DNA sequence on transcription factor binding sites

answered Jul 16, 2018 at 13:06

3 votes

Associating SNP and GENE

answered Jul 9, 2018 at 7:47

Stack Exchange Network

40 Answers

What does 'Human Alternative sequence Gene' mean in Ensembl?

HG19 Position meaning

Synteny test and tools to use for mammalian organisms?

Variant vs Allele vs SNP

Why the gene symbol aliases have significantly different sequences?

Getting all variants in a region from ensembl

Converting gene symbols between species

How to identify the DNA sequence of a gene in the complete genome sequence FASTA format file?

What is the best way to programmatically convert Ensembl ids from one release to other? e.g. transcript ids from release 75 to 100

Retrieving all genes for a gene ontology term

How do I create a VCF file of all known pathogenic mutations in a gene of interest?

1000 genomes missing SNPs on chr X in GRCh38

Ensembl protein identifiers from different assemblies

Is it possible to obtain RefSeq transcripts from Ensembl database for GRCh37 to match Ensembl Genes?

Where can I get ensembl Medaka genome for RNAseq

Getting species from ensembl sequence id

How to efficiently get human gene names from NCBI based on a large list of SNPs

Discordance of Gene Ontology data between Mouse Genome Informatics and Ensembl sources

VEP output SIFT_score unclear

How can I identify a recessive and dominant gene?

Retrieve all genes for a specific gene ontology

different results coming from biomart online and biomaRt R library

How do population genetics people define a population?

Understanding SNP coding for association analysis

Sampling haplotypes

Are gene names same across species?

Python API for working with ENSEMBL genomes

Variants in Exome that affect miRNAs related to Schizophrenia

Effect of mutation in DNA sequence on transcription factor binding sites

Associating SNP and GENE