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Mark Ebbert
  • Member for 5 years, 2 months
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7 Answers

Score Activity Newest
12 votes
Accepted

Which quality score encoding does PacBio use?

sequencing pacbio
answered Jun 23, 2017 at 21:30
5 votes

Read length distribution from FASTA file

fasta nanopore
answered Jun 24, 2017 at 17:29
4 votes

How do you generate read-length vs read-quality plot for long-read sequencing data (e.g., MinION)?

nanopore sequencing biopython fastq python
answered Jun 24, 2017 at 18:16
2 votes
Accepted

How to interpret the SMRT Link base modification algorithm output?

long-reads pacbio
answered Mar 9, 2018 at 0:10
2 votes
Accepted

GATK documentation for required depth to reliably call heterozygous mutation in diploid organism?

gatk wgs coverage
answered Sep 25, 2018 at 15:28
2 votes

Nextflow (DSL v2): how to best synchronize multiple outputs from a single process

nextflow
answered Feb 13 at 1:24
2 votes
Accepted

Samtools sort: most efficient memory and thread settings for many samples on a cluster

sequence-alignment sequence-analysis samtools
answered Feb 19 at 19:45
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