User Mark Ebbert - Bioinformatics Stack Exchange

Mark Ebbert

Member for 5 years, 2 months
Last seen more than a month ago

7 Answers

Score Activity Newest

12 votes

Accepted

Which quality score encoding does PacBio use?

sequencing pacbio

answered Jun 23, 2017 at 21:30

5 votes

Read length distribution from FASTA file

fasta nanopore

answered Jun 24, 2017 at 17:29

4 votes

How do you generate read-length vs read-quality plot for long-read sequencing data (e.g., MinION)?

nanopore sequencing biopython fastq python

answered Jun 24, 2017 at 18:16

2 votes

Accepted

How to interpret the SMRT Link base modification algorithm output?

long-reads pacbio

answered Mar 9, 2018 at 0:10

2 votes

Accepted

GATK documentation for required depth to reliably call heterozygous mutation in diploid organism?

gatk wgs coverage

answered Sep 25, 2018 at 15:28

2 votes

Nextflow (DSL v2): how to best synchronize multiple outputs from a single process

nextflow

answered Feb 13 at 1:24

2 votes

Accepted

Samtools sort: most efficient memory and thread settings for many samples on a cluster

sequence-alignment sequence-analysis samtools

answered Feb 19 at 19:45