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Mark Ebbert
  • Member for 5 years
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13 votes
3 answers
4k views

How do you write a .gz fastq file with Biopython?

11 votes
1 answer
3k views

Which quality score encoding does PacBio use?

9 votes
2 answers
2k views

How do you generate read-length vs read-quality plot for long-read sequencing data (e.g., MinION)?

7 votes
1 answer
106 views

Where can I find summary data for how common certain mutation *types* are?

6 votes
1 answer
918 views

How to maximize fastq parsing with FastqGeneralIterator (Bio.SeqIO.QualityIO)

6 votes
1 answer
135 views

GATK documentation for required depth to reliably call heterozygous mutation in diploid organism?

5 votes
1 answer
3k views

hg38 GTF file with RefSeq annotations

4 votes
2 answers
186 views

Nextflow (DSL v2): how to best synchronize multiple outputs from a single process

3 votes
1 answer
92 views

Nextflow: dynamically setting resource directives for a process

3 votes
1 answer
66 views

BWA mem | samtools view: Intermittent parsing error

3 votes
1 answer
89 views

Nextflow scheduler job doesn't end upon successful workflow completion

2 votes
1 answer
58 views

Nextflow: cannot get file pairs from Channel.fromFilePairs

2 votes
2 answers
219 views

Samtools sort: most efficient memory and thread settings for many samples on a cluster

2 votes
1 answer
64 views

Samtools sort: most efficient approach to sort a single sample after aligning split .fastq files

2 votes
1 answer
339 views

Visualize PLINK pedigree files

1 vote
2 answers
245 views

Nextflow: how to create many-to-many tuple for process