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pubsurfted
  • Member for 1 year, 4 months
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4 votes
1 answer
327 views

How to run a nextflow process for each file generated by another process separately - Input tuple does not match input set cardinality error

4 votes
2 answers
382 views

ERR: error while loading shared libraries: libjulia.so.1: cannot open shared object file [Julia] - Ubuntu 22.04

3 votes
1 answer
116 views

How to remove double '/' from file path, bash script

3 votes
1 answer
334 views

How to include only the trimmed fastq files into a nextflow channel and exclude any secondary log files created?

3 votes
1 answer
388 views

How to handle output from a python script that gives different outputs depending upon the condition - Nextflow

2 votes
1 answer
672 views

How to manually trim FASTA file sequences with the information provided in the header and store it into a new FASTA file? - Python

2 votes
1 answer
865 views

How to keep the basename of an input file and change its extension in Nextflow?

2 votes
2 answers
474 views

How does one account for both single end and paired end reads as input in a Nextflow pipeline?

2 votes
1 answer
225 views

Alignment process in Nextflow not picking up the index files from the index process

1 vote
1 answer
188 views

How to run how_are_we_stranded_here?

0 votes
2 answers
308 views

How do I determine read length from a user-inputted fastq file and then input that information into a tool's command line?