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ATpoint's user avatar
ATpoint's user avatar
ATpoint
  • Member for 1 year, 5 months
  • Last seen this week
5 votes
Accepted

Estimate insert size for single-end data with picard CollectInsertSizeMetrics

5 votes
Accepted

mapping nucleotide sequences

4 votes

Display row and column names in R

4 votes
Accepted

What trajectory analysis method allows to set the form of the trajectory?

4 votes

Issue with Differential Gene expression analysis with Deseq2

4 votes

seeing full results on R

3 votes

Discrepancy with featurecounts analysis using a forward stranded and reverse stranded protocol

3 votes

Filtering columns from large file based on a column list

3 votes

issue with rna seq analysis

3 votes

Kallisto RNA-seq errors because of incompatible indices when running <kallisto quant> using downloaded mouse index

3 votes
Accepted

Featurecount output .txt file from bam file

3 votes
Accepted

Why doesn't bedtools getfasta pick up the first base?

3 votes

Differential gene expression: how do I correctly compare three groups to each other?

3 votes
Accepted

How to pack up a Python script in the form a Dockerfile

3 votes

Is it ok to shortcut cluster annotation in scRNA-seq?

3 votes

Differences between Gencode GTF and Ensembl GTF files

2 votes
Accepted

Reasons for extremely low number of DESeq identified differentially expressed genes after RNAseq?

2 votes
Accepted

Inconsistent microarray expression levels after normalizing with log2

2 votes

Error while running computeMatrix command in Deeptools

2 votes

How to identify index sequences for cutadapt for atac-seq

2 votes
Accepted

Snakemake and github actions

2 votes

How does one account for both single end and paired end reads as input in a Nextflow pipeline?

2 votes
Accepted

How much of the space of motifs have been discovered?

2 votes
Accepted

DESeq2 throwing error while normalizing raw microarray expression data due to presence of negative values

2 votes
Accepted

Can bwameth accept unaligned Bam?

2 votes
Accepted

nextflow: unable to find index

2 votes

Batch correction in differential expression analysis

2 votes

How to identify a low proportion cell subpopulation in the single-cell RNA-seq data?

2 votes

Error while using SummarizedExperiment() in R

2 votes

Is the potential skewing of FDR and ranking of gene set analysis with gene sets with hierarchical structure a concern?