Bioinformatics
Matt Bashton's user avatar
Matt Bashton's user avatar
Matt Bashton's user avatar
Matt Bashton
  • Member for 6 years, 6 months
  • Last seen more than 2 years ago
Profile Activity
Stats
1,059
reputation
43k
reached
20
answers
4
questions
Communities
View all
About

Cancer/Clinical Bioinformatician currently working at the Northern Institute for Cancer Research, primarily working with sequencing data from various cancer exomes and genomes - specifically: somatic variant calling (SNVs, indels), structural variant calling and copy number variation. Previously worked/studied: Bioinformatics Support Unit, EMBL-EBI (Thornton group), MRC-LMB (Chothia group), Sanger Institute (Pfam).

Publications: Pubmed, Google Scholar

Badges
View all badges
This user doesn’t have any gold badges yet.
6
silver badges
16
bronze badges
Top tags
View all tags
12
Score
6
Posts
25
Posts %
12
Score
2
Posts
8
Posts %
12
Score
2
Posts
8
Posts %
8
Score
2
Posts
8
Posts %
7
Score
2
Posts
8
Posts %
6
Score
3
Posts
12
Posts %
Top posts
View all questions and answers
All Questions Answers
Score Newest
question
10
Selecting sites from VCF which have an alt AD > 10
Jul 3, 2017
answer
7
Why do BAM files created by different tools have different file sizes?
Jun 3, 2017
answer
7
Run kallisto iteratively across many samples
Jul 3, 2017
question
6
Detecting structural variants with MinION data
Jun 4, 2017
answer
6
What is the fastest way to calculate the number of unknown nucleotides in FASTA / FASTQ files?
Jun 2, 2017
answer
6
Fast way to count number of reads and number of bases in a fastq file?
Jul 2, 2017
answer
5
Do you use SNAP for short-read mapping?
Jun 3, 2017
answer
4
Stable download URLs
Jun 3, 2017
answer
4
Generic HMM solvers in bioinformatics?
Jun 4, 2017
answer
4
No variant found using GATK 4.0 HaplotypeCaller
Jul 13, 2018
Top Meta posts
0
2
5
Is it appropriate to ask for method papers on specific topics?
4
Improving the site after 1 Year!
Top network posts
View all network posts
6
After do-release-upgrade to 13.04 from 12.10 I still get informed about 13.04 on log-in via MOTD

Your privacy

By clicking “Accept all cookies”, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy.