User Kohl Kinning

5 votes

Accepted

Hosting IGV web on a server

answered Jul 23, 2019 at 17:11

4 votes

Accepted

Issue with visualising cladogram/phylogenetic tree with multiple sequence alignment data in R?

answered Jun 17, 2019 at 16:14

3 votes

Protein SCA and DCA

answered Jul 11, 2019 at 0:21

3 votes

Changing a wide range of colours to a limited gradient

answered Oct 30, 2018 at 19:56

3 votes

Accepted

Changing a wide range of colours to a limited gradient

answered Nov 1, 2018 at 15:50

3 votes

Accepted

Build a Pubmed query given long gene list

answered Nov 5, 2018 at 18:34

3 votes

Accepted

Changing the name of elements in a column

answered Dec 9, 2019 at 18:53

3 votes

How can I not show insertions in the Integrative Genome Viewer (IGV)?

answered Jan 2, 2020 at 22:10

3 votes

Accepted

Seurat FindMarkers() output, percentage

answered Jan 9, 2020 at 16:57

3 votes

How to compare transcriptomic profiles of two cell types (single cell RNA-seq)?

answered Jan 28, 2018 at 20:14

3 votes

Accepted

Output of Seurat FindAllMarkers parameters

answered Jul 2, 2018 at 20:18

3 votes

Accepted

Difference between samtools mark duplicates and samtools remove duplicates?

answered Jul 3, 2018 at 14:01

3 votes

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Increase number of threads for GATK 4.0 HaplotypeCaller

answered Jul 2, 2018 at 18:59

3 votes

Accepted

Using external list of PCs for clustering

answered Oct 24, 2018 at 14:50

2 votes

Genotyping with Illumina HumanOmni1-Quad before whole genome sequencing

answered Jul 2, 2018 at 19:48

2 votes

Accepted

How to run MaxQuant in command line mode?

answered Jul 13, 2018 at 22:21

2 votes

Accepted

Is there a way to tell which chromosome a gene is on, by looking at the "Chromosome/scaffold name"

answered Jul 2, 2018 at 16:14

2 votes

High Phred Quality score VCF file

answered Jul 2, 2018 at 18:43

2 votes

Can we describe synthetic biological sequence data as belonging to a "species" or "taxon"?

answered Sep 7, 2017 at 8:22

2 votes

Subsetting of object existing of two samples

answered Aug 1, 2019 at 21:28

2 votes

Accepted

Can I get the graph generated by cellranger

answered Nov 13, 2018 at 22:54

2 votes

Accepted

ScaleData() from Seurat causes crash on RStudio Cloud

answered Nov 14, 2018 at 18:56

1 vote

In calculating the retention index, why do we use the character state with the lowest frequency?

answered Oct 25, 2018 at 14:48

1 vote

AutoDock 4 -soft docking

answered Nov 11, 2019 at 21:23

1 vote

how to change the PC use in the dimplot and feature plot

answered Dec 18, 2019 at 22:26

1 vote

Getting hierarchy of cell populations with Drop-seq data

answered Oct 31, 2017 at 18:17

1 vote

Batch detection of CRISP proteins in fasta file

answered Jul 3, 2018 at 14:26

1 vote

Convert Cotton Probe ID to Gene Symbol

answered Jul 12, 2018 at 22:25

1 vote

Compare clusters from different datasets

answered Oct 22, 2018 at 20:59

1 vote

chromPlot R package: remove scales

answered Oct 22, 2018 at 21:04

Stack Exchange Network

33 Answers

Hosting IGV web on a server

Issue with visualising cladogram/phylogenetic tree with multiple sequence alignment data in R?

Protein SCA and DCA

Changing a wide range of colours to a limited gradient

Changing a wide range of colours to a limited gradient

Build a Pubmed query given long gene list

Changing the name of elements in a column

How can I not show insertions in the Integrative Genome Viewer (IGV)?

Seurat FindMarkers() output, percentage

How to compare transcriptomic profiles of two cell types (single cell RNA-seq)?

Output of Seurat FindAllMarkers parameters

Difference between samtools mark duplicates and samtools remove duplicates?

Increase number of threads for GATK 4.0 HaplotypeCaller

Using external list of PCs for clustering

Genotyping with Illumina HumanOmni1-Quad before whole genome sequencing

How to run MaxQuant in command line mode?

Is there a way to tell which chromosome a gene is on, by looking at the "Chromosome/scaffold name"

High Phred Quality score VCF file

Can we describe synthetic biological sequence data as belonging to a "species" or "taxon"?

Subsetting of object existing of two samples

Can I get the graph generated by cellranger

ScaleData() from Seurat causes crash on RStudio Cloud

In calculating the retention index, why do we use the character state with the lowest frequency?

AutoDock 4 -soft docking

how to change the PC use in the dimplot and feature plot

Getting hierarchy of cell populations with Drop-seq data

Batch detection of CRISP proteins in fasta file

Convert Cotton Probe ID to Gene Symbol

Compare clusters from different datasets

chromPlot R package: remove scales