Bioinformatics Beta
Iakov Davydov
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About

Postdoc in Bioinformatics. Working on codon models of positive selection and their computational efficiency.

Using: Python, Bash, R, Go a bit of C and C++.

Doing machine learning for fun.

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All Questions Answers
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27 How to version the code and the data during the analysis? May 18 '17
18 How to compute RPKM in R? May 17 '17
17 What's the difference between VCF spec versions 4.1 and 4.2? Jun 1 '17
15 How to convert species names into common names? Jun 8 '17
12 What is the best way to account for GC-content shift while constructing nucleotide-based phylogenetic tree? May 18 '17
12 Is it possible to perform MinION sequencing offline? May 31 '17
11 State of the art mutation simulation software Dec 8 '17
10 Which sequence alignment tools support codon alignment? Jul 5 '17
9 How to compute RPKM in R? May 17 '17
9 How can we find the distance between all residues in a PDB file? Jun 16 '17
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