Iakov Davydov's user avatar
Iakov Davydov's user avatar
Iakov Davydov's user avatar
Iakov Davydov
  • Member for 6 years, 9 months
  • Last seen more than 1 year ago
16 votes
Accepted

What's the difference between VCF spec versions 4.1 and 4.2?

15 votes
Accepted

How to convert species names into common names?

10 votes

How can we find the distance between all residues in a PDB file?

9 votes
Accepted

How can I build a protein network pathway from a gene expression quantification file?

9 votes

How to compute RPKM in R?

8 votes

What is the fastest way to calculate the number of unknown nucleotides in FASTA / FASTQ files?

8 votes
Accepted

How to transform a DNAStringSet from the Bioconductor package Biostrings to a data frame?

6 votes
Accepted

How to align output of grep --color=always? (To QC fasta/fastq files)

6 votes
Accepted

How can the cell line contribution be estimated from RNASeq data?

5 votes

Protein folding problem model for quantum computers?

5 votes
Accepted

How to run HYPHY on multiple files non-interactively?

5 votes
Accepted

What are the ways to keep track of branches in the analysis?

4 votes
Accepted

using python to write bioinformatics pipelines tutorial

4 votes
Accepted

How to calculate statistical significance of sequence motifs

4 votes
Accepted

Linear models of complex diseases

4 votes
Accepted

How to manipulate protein interaction network from String database in R?

3 votes

What methods should I use from PythonCyc API to query metabolites in BioCyc database?

3 votes

What is the etymology of "Entrez ID"?

2 votes
Accepted

Obtaining all protein sequences with a particular domain architecture from Pfam

2 votes

Plotting Ramachandran Plot from more than one PDB file

2 votes
Accepted

Fitting branch models with godon

1 vote
Accepted

What are the p01sum and p0prop parameters in godon?

1 vote

Gene set enrichment analysis on differential phosphorylation sites