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conchoecia
  • Member for 4 years, 5 months
  • Last seen more than a month ago
  • Santa Cruz, CA, United States
16 votes
Accepted

Why does this human bam file only have one copy of each chromosome?

10 votes
Accepted

Importing GFF file with Biopython

9 votes
Accepted

How to count the number of mapped read in 100-bp window from a BAM/SAM file

9 votes
Accepted

What is the index fastq file (sample_I*.fastq.gz) generated when demultiplexing Illumina paired-end runs?

7 votes
Accepted

Are these standard species abbreviations and how to look up others?

6 votes
Accepted

Can I stop my nanopore sequencing run if there are no more reads being produced?

5 votes

finding unique headers in a fasta file using linux command line

5 votes
Accepted

How to simulate nanopore reads?

5 votes

cDNA and alignment mapping

5 votes
Accepted

Why is a PacBio read length larger than the aligned reference region?

4 votes

Visualize similar interactions in two homologous networks

4 votes

How to export web NCBI tBLASTn results in table format with many queries?

4 votes

Bash scripting FastQC for multiple fastq files in multiple directories

3 votes

Real time transcript profiles

3 votes
Accepted

Mapping Reads to Known Gene Paralogs with Long Read Technology

3 votes
Accepted

Can pair end reads with high heterozygosity be used to polish PacBio assembly?

3 votes
Accepted

At what stage of a transcriptome assembly is it better to perform read contaminant filter?

3 votes
Accepted

What does it mean to over sample?

3 votes

Targeted NGS, up to 99% of reads have been marked as duplicates

3 votes
Accepted

How to generate two fasta files from samtools phase output?

2 votes

Restricting match output for multiple sequence alignment using mafft?

2 votes

How to correctly call a VCF file using damaged DNA? (IonTorrent & FFPE)

2 votes
Accepted

Allele Count and Allele Frequency in VCF files

2 votes

How to compare sequences of genes obtained after whole-genome sequencing to reference genome?

2 votes

Total reads aligning to each reference within a bam file

2 votes
Accepted

What are some of the major questions pursued by the field bioinformatics?

2 votes

Tool to remove a PCR contamination in NGS data

2 votes
Accepted

Multiple sequence pairwise global alignment against reference sequence

2 votes
Accepted

How to find all variable-length seqs with an exact 5' and 3' match in a FASTA file

2 votes

How to get the longest fasta sequence including all possible switching isoforms of a gene out of isoforms