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Maximilian Press's user avatar
Maximilian Press's user avatar
Maximilian Press
  • Member for 6 years, 3 months
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2 votes
Accepted

Generating contigs from illumina Paired End Reads (Metagenome)

2 votes

multi-sequence alignment of samples with multiple contigs each

2 votes
Accepted

Is this a complete bacterial genome? (CheckM)

2 votes
Accepted

Identifying Novel Species with ANI Taxonomy

2 votes
Accepted

Why does randomized motif search work?

2 votes

How Does Cox Proportional Hazard Model Describe Interaction between Covariates

2 votes
Accepted

Simulation of DNA sequences through substitution rates

2 votes
Accepted

Alignment statistics

2 votes
Accepted

How can I calculate the distances between two specific residues of a protein from a PDB file?

2 votes
Accepted

Translate all reads in a .fastq into protein sequence from deep mutational scanning experiment

2 votes

Transfer annotations from one genome assembly to another

2 votes
Accepted

How do you set the coverage in PacBio's Sequel II?

2 votes

How to plot the gap distribution of contigs wrt to reference genome

2 votes
Accepted

how to retain reads with low mapping quality (MAPQ) scores when using samtools view -q

2 votes
Accepted

What is the best way to process yeast genomes?

2 votes

Using very closely related strains to increase coverage for short read, de novo assembly

2 votes

Is there any book or reference that explains evolutionary dynamics and fixation probability?

2 votes
Accepted

Understanding regularization step in Meta-cell pre processing

2 votes

Downloading genes from NCBI in fasta format

2 votes
Accepted

Improving prokaryotic assembly with other contig/scaffold-level data?

2 votes
Accepted

How to calculate frequency of a category with respect to the value in another column?

2 votes

Getting nearest gene from SNP data using SNP ID, CHR, and BP

2 votes

How many protein sequences do we usually have for each species?

2 votes
Accepted

Parameter optimisation of minimap2

2 votes

Cannot obtain alignment summary after running Bowtie2

2 votes

Generating simulated gold standard NGS dataset/ Any publicly available smal gold standard NGS dataset

2 votes

Current 'most comprehensive' whole genome alignment resource for human?

2 votes

If I modify a PDB file with a specific mutation, how to minimize energy?

2 votes

Alignment to verify plasmid from forward and reverse Sanger sequencing reads

2 votes
Accepted

Reads count in metagenomics