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swbarnes2
  • Member for 4 years, 2 months
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7 votes

why in RNA seq don't we only use reference transcriptome?

5 votes

Can a gff file be converted to a fasta file?

5 votes

Normalization for two bulk RNA-Seq samples to enable reliable fold-change estimation between genes

4 votes
Accepted

Matching these matrices in R

4 votes

BAM to gene expression matrix (UMI counts per gene per cell),10X

4 votes

What is and how to detect a dephased read

4 votes
Accepted

What is cellranger doing in comparison to other methods?

4 votes

R not being able to find the file despite being in correct directory

4 votes

FASTQ file trimming

4 votes

Fastq: how can I check if they are from DNA or RNAseq data?

3 votes
Accepted

Differential expression analysis for a subset of transcripts

3 votes

BWA doesn't recognize HiC options

3 votes
Accepted

Find rsIDs for GRCh37 SNPs and rsIDs for GRCh38 SNPs and compare for overlap

3 votes
Accepted

Installing a R package from git

3 votes

Differential expression analysis when nested effects

3 votes

Error: sort order of reads in BAMs must be the same

3 votes
Accepted

How are UMIs used to dedupulicate in Drop-seq tools?

2 votes

Statistical test design question

2 votes

how can i download rna-seq data sample for starting rna-seq analysis by R?

2 votes

Regressing out unwanted sources of variation in single cell RNA-seq data

2 votes
Accepted

Does the galGal5 chicken assembly have a chromosome 29?

2 votes
Accepted

How to search a specific sequence in BAM files for 10X experiment

2 votes

Which data is being used for violin plot?

2 votes
Accepted

RNA-seq: How to get new expression count after normalization

2 votes
Accepted

Hemoglobin subunits genes in scRNA-seq

2 votes

Sort reads in BAM file based on presence of specific deletion?

2 votes

if I know the number of sequencing circles can I give this information to DESeq2?

2 votes

Merging several fq.gz files or R1 and R2 classes into a single one

2 votes

Bulk RNA-Seq Read Length Normalization across different samples

2 votes

how to easily make complex Euler/Venn diagrams in R?