swbarnes2's user avatar
swbarnes2's user avatar
swbarnes2's user avatar
swbarnes2
  • Member for 6 years, 1 month
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1 vote

How to make work programs from the $PATH?

1 vote

Bacterial DNA at the tail of transcriptome reads. What does that mean?

1 vote

What pitfalls exist with running FastQC on a bam file?

1 vote

Subsetting from seurat object based on orig.ident?

1 vote

RNAseq biological replicates not clustering in PCA plots

1 vote

Basic question about finding mRNA sequence in transcriptome

1 vote

Interpreting this PCA plot for RNA-seq

1 vote

How I can run this code on my files?

1 vote

match two files and check if position of chrom is within exon region

1 vote

How I deal with this expression set?

1 vote

hisat2 --rna-strandness option and downstream htseq-count analysis

1 vote

Using cellranger for non-10x data

1 vote

Strange p-value histogram for differential gene expression analysis

1 vote

Is there a computational tool or possibility to identify mRNA isoforms from the count matrix of a bulk RNA sequencing dataset?

1 vote

Transform and feed data into DESeq2 with DESeqDataSetFromMatrix

1 vote

SC-RNA seq percent.mito

1 vote

Is it possible to create a DESeqDataSet with a user-provided design matrix?

1 vote

How can I downsample a BAM file while keeping both reads in pairs?

1 vote

Identifying Indels from Chromatograms

1 vote

Selection of differential expressed genes

1 vote

bowtie2 options when mapping stranded single end reads

1 vote

GTF from consensus sequence

1 vote

How to predict stop codons in Illumina reads?

1 vote

Hard-clip primers in a bam file

1 vote
Accepted

Why does DESeq2 convert numeric columns to factor during differential expression analysis?

0 votes

How can I transform a mapped BAM file into an unmapped BAM file?

0 votes

making a customer reference by using cell ranger

0 votes

Extract mapping coverage from GTF files

0 votes

How to demultiplex a mix of single-indexed and dual-indexed samples

0 votes

Genotyping technologies do not maintain phase?